Auburn/USDA Internship in EPG Visualizations and Analysis

Central to the US Department of Agriculture's mission is a deeper, fundamental understanding of agricultural and
livestock pest arthropods, such as aphids and ticks, how they cause damage, and the pathogens they carry.
The electropenetrograph (EPG) is a crucial tool for understanding transmission of arthropod-borne
pathogens. The EPG enables the collection and study of arthropod behavior as they attach, feed, and
detach from livestock and plants. As such, it has been central to tracking and mitigating the dangers that
arthropods such as ticks and aphids can - and do - pose to the agricultural output of the US and the
world.

In the 2023-24 academic year, one engineering and one CS clinic team undertook a complete redesign and prototyping and EPG's hardware and software. This project will start from that software effort and pursue some of the Auburn/USDA team's ambitions, building on top of its data-collection-and-display foundation.   Those ambitions include (1) additional visualization and time-series manipulation of EPG signals, (2) application of a suite of traditional post-processing algorithms to the signals for analysis and modeling, and (3) development of novel, EPG-specific workflows leveraging current promising practices in AI-and-ML for time-series analysis. 

An especially important facet of this project is software quality. The team will first build from the codebase created by the '23-'24 clinic; they will add features -- and organization for supporting more; and they will hand off the system for further development by a '24-'25 clinic. In addition, this project offers an entrepreneurial angle, if it is of interest: the hardware and software being developed by Auburn University, the NSF, and the USDA are intended to coalesce into a self-sustaining business of value to agricultural laboratories, departments, and researchers worldwide. 

Name of research group, project, or lab
Summer of CS
Why join this research group or lab?

This project will be one of the many overlapping with the "Summer of CS" in the CS department. It is in the middle of a large, multi-institutional, multi-foundation effort to improve the US's and the world's understanding of - and control over - crop pests.

Representative publication
Logistics Information:
Project categories
Computer Science
Student ranks applicable
Sophomore
Junior
Senior
Student qualifications

This is a project that mixes software engineering -- consistent, careful organization and execution -- with computational exploration -- applying AI and ML to EPG signals, and visualizing the results in valuable ways. CS70 is a prerequisite; it is, perhaps, an interesting opportunity for rising seniors who might see themselves continuing as clinic team members on the project through '24-25. Ultimately, the software will be a stand-alone application, ultimately serving the agricultural researchers whose work are crucially informed by these signals.  (In the "optional essay" part of the application, feel free to share a sentence or two on your own past software projects.)

Time commitment
Summer - Full Time
Compensation
Paid Research
Number of openings
3
Techniques learned

You will have stories to tell! If you'd like, you will be invited to glue wires to insects in order to extract new signals. (This is optional.) Guaranteed, participants will build additional experience and confidence in both software engineering and exploratory computing, with an important end-goal in sight. 

Project start
Negotiable, summer 2024.
Contact Information:
Mentors
Zach Dodds
dodds@hmc.edu
Mentor
Zach Dodds
dodds@hmc.edu
Mentor
Name of project director or principal investigator
Zach Dodds
Email address of project director or principal investigator
dodds@cs.hmc.edu
3 sp. | 27 appl.
Hours per week
Summer - Full Time
Project categories
Computer Science